Paper Review Records
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Review days = acceptance date − received date. PDF, DOI, and publisher-page sources are retained.
Reconstruction of cell diversity and cell lineages from somatic mutations in single-cell transcriptomic data
AuthorsSatoshi Oota; Kuniya Abe; Cheng-Tsung Pan; Hideo Yokota; Wen-Hsiung Li; Kazuho Ikeo
Affiliations1. Center for Advanced Photonics, RIKEN , Wako, Saitama 351-0198 ,; 2. BioResource Research Center , RIKEN, Tsukuba, Ibaraki 305-0074 ,; 3. Graduate School of Integrated Sciences for Life, Hiroshima University , Higashi-Hiroshima, Hiroshima 739-0046 ,; 4. Laboratory for Regulatory Genomics, RIKEN Center for Integrative Medical Sciences , Yokohama, Kanagawa 230-0045 ,; 5. Biodiversity Research Center, Academia Sinica , Taipei 11529 ,; 6. Department of Ecology and Evolution, University of Chicago , Chicago, IL 60637 ,; 7. DNA Data Analysis Laboratory, National Institute of Genetics , Mishima, Shizuoka 411-8540 ,
Chromosomal evolution and speciation inferred from chromosome-scale genome assemblies in three Cupressaceae species
AuthorsKenta Shirasawa; Yuta B Aoyagi; Kentaro Mishima; Hideki Hirakawa; Tomonori Hirao
Affiliations1. Department of Frontier Research and Development, Kazusa DNA Research Institute , Chiba 292-0818 ,; 2. Kyushu Regional Breeding Office, Forest Tree Breeding Center, Forestry and Forest Products Research Institute, Forest Research and Management Organization , Kumamoto 861-1102 ,; 3. Faculty of Agriculture, Kyushu University , Fukuoka 819-0395 ,; 4. Forest Tree Breeding Center, Forestry and Forest Products Research Institute, Forest Research and Management Organization , Ibaraki 319-1301 ,
SIEVEseq: unified differential expression, variability, and skewness analyses using RNA-Seq data
AuthorsHongxiang Li; Tsung Fei Khang
Affiliations1. School of Mathematics, Yunnan Normal University , Kunming, Yunnan 650500 ,; 2. Yunnan Key Laboratory of Modern Analytical Mathematics and Applications , Yunnan Normal University, Kunming, Yunnan 650500 ,; 3. Institute of Mathematical Sciences, Faculty of Science, Universiti Malaya , Kuala Lumpur 50603 ,; 4. Universiti Malaya Centre for Data Analytics, Universiti Malaya , Kuala Lumpur 50603 ,
Enrichment-free deep proteomics enables proteome-scale analysis of methionine oxidation
AuthorsHiromasa Mitsui; Yusei Okuda; Ryo Konno; Daisuke Nakajima; Osamu Ohara; Yusuke Kawashima
Affiliations1. Department of Applied Genomics, Kazusa DNA Research Institute , Kisarazu, Chiba 292-0818 ,; 2. Department of Physics, School of Science, Kitasato University , Sagamihara, Kanagawa 252-0373 ,
The genome of a keystone predator: adaptive innovations in Charonia tritonis drive specialized predation and coral reef resilience
AuthorsYu Shi; Zhaoyan Zhong; Wenguang Liu; Yanhong Zhang; Jin Sun; Maoxian He
Affiliations1. State Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences , Guangzhou 510301 ,; 2. Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences , Guangzhou 510301 ,; 3. Key Laboratory of Evolution & Marine Biodiversity (Ministry of Education) and Institute of Evolution & Marine Biodiversity, Ocean University of China , Qingdao 266003 ,
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