Paper Review Records
All Paper Review Records
12 valid samples · Newest publication first
Review days = acceptance date − received date. PDF, DOI, and publisher-page sources are retained.
MPLID (Membrane Protein–Lipid Interaction Database): A Large-Scale Experimental Resource of Residue-Level Protein–Lipid Contacts
AuthorsFolorunsho Bright Omage; Goran Neshich
Affiliations1. Department of Computer Science, University of Oxford , Wolfson Building, Parks Road, Oxford OX1 3QD ,; 2. The Computational Biology Research Group, Embrapa Digital Agriculture , Av. André Tosello 209, Campinas, SP 13083-886 ,; 3. Biological Chemistry Laboratory, Department of Organic Chemistry, Institute of Chemistry, University of Campinas (UNICAMP) , R. Monteiro Lobato 270, Campinas, SP 13083-970 ,
EEG-based dataset explicitly targets the transitions between sitting and standing for exploring neural activation patterns in motor imagery and execution
AuthorsBenjakarn Uengsawapak; Supavit Kongwudhikunakorn; Suktipol Kiatthaveephong; Wipamas Polpakdee; Rattanaphon Chaisaen; Chanitsada Chuenchit; Poramate Manoonpong; Gun Bhakdisongkhram; Theerawit Wilaiprasitporn
Affiliations1. School of Information Science and Technology (IST), Vidyasirimedhi Institute of Science and Technology (VISTEC) , 555 Moo 1 Payupnai, Wangchan, Rayong 21210 ,; 2. Sirindhorn International Institute of Technology, Thammasat University , 99 Moo 18, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120 ,; 3. School of Physical Medicine and Rehabilitation, Institute of Medicine, Suranaree University of Technology , 111 University Avenue, Suranaree, Muang, Nakhon Ratchasima 30000 ,
New causal discovery algorithm over censored variables identifies subtype-specific drivers of breast cancer progression
AuthorsTyler C Lovelace; Panayiotis V Benos
Affiliations1. University of Pittsburgh School of Medicine Department of Computational & Systems Biology, , 3396 Fifth Avenue, Pittsburgh, PA 15213 ,; 2. Joint CMU-Pitt PhD Program in Computational Biology , Pittsburgh, PA 15213 ,; 3. University of Florida Department of Epidemiology, , 2004 Mowry Rd, Gainesville, FL 32610 ,
METRIN-KG: A knowledge graph integrating plant metabolites, traits, and biotic interactions
AuthorsDisha Tandon; Tarcisio Mendes De Farias; Pierre-Marie Allard; Emmanuel Defossez
Affiliations1. Faculty of Science, Institute of Biology, University of Neuchâtel , Rue Emile-Argand 11, 2000 Neuchâtel ,; 2. SIB Swiss Institute of Bioinformatics , Amphipôle, Quartier UNIL-Sorge, 1015 Lausanne ,; 3. Faculty of Science and Medicine, Department of Biology, University of Fribourg , Chemin du Musée 10, 1700 Fribourg ,
NEXT-scASV: a Nextflow pipeline for allele-specific variant calling from single-cell RNA-seq data
AuthorsAndrey Shevtsov; Andrey Buyan; Vladimir Nozdrin; Pavel Akhtyamov; Alexey Stupnikov; Georgy Meshcheryakov; Ivan V Kulakovskiy; Yulia A Medvedeva
Affiliations1. Research Institute of Biotechnology, Russian Academy of Sciences , Moscow117312 Vavilova Street 7; 2. Bioinformatics Group, AIRI , Moscow121170; 3. Institute of Protein Research, Russian Academy of Sciences , Institutskaya 4142290Pushchino; 4. Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , MoscowLeninskie Gory 1119234; 5. Moscow Center for Advanced Studies Department of Biomedical Physics, , Kulakova Street 20b1, Moscow123592; 6. National Research University Higher School of Economics , 11 Pokrovksy Bulvar, Moscow 109028; 7. Vavilov Institute of General Genetics, Russian Academy of Sciences , MoscowGubkina 3119991; 8. Institute of Biochemistry and Genetics, Ufa Federal Research Centre of the Russian Academy of Sciences , Oktyabrya 71450054Ufa; 9. Mohamed Bin Zayed University of Artificial Intelligence , Masdar City, Abu Dhabi
scDenorm: a denormalization tool for integrating single-cell transcriptomics data
AuthorsYin Huang; Anna Vathrakokoili Pournara; Ying Ao; Ziliang Huang; Hui Zhang; Yongjian Zhang; Sheng Liu; Alvis Brazma; Irene Papatheodorou; Xinlu Yang; Ming Shi; Zhichao Miao
Affiliations1. Translational Research Institute of Brain and Brain-Like Intelligence and Department of Anesthesiology, Shanghai Fourth People’s Hospital Affiliated to Tongji University School of Medicine , Shanghai 200434 ,; 2. Guangzhou National Laboratory, Guangzhou International Bio Island , Guangzhou 510005 ,; 3. European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Genome Campus , Cambridge CB10 1SD ,; 4. GMU-GIBH Joint School of Life Sciences, Guangzhou Medical University , Guangzhou 511436 ,; 5. Harbin Red Cross Central Hospital Department of Obstetrics and Gynaecology, , Harbin 150001 ,; 6. Harbin Medical University Cancer Hospital Department of Surgery Oncology, , Harbin 150001 ,; 7. State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science , Guangzhou 510623 ,; 8. Guangdong Province Key Laboratory of Brain Function and Disease , Guangzhou 510623 ,; 9. School of Life Science and Technology, Harbin Institute of Technology , Harbin 150001 ,
What needs to be standardized for reliable, reproducible, and robust tractography?
AuthorsJon Haitz Legarreta; Simona Schiavi; Wei Tang; Garrett Banks; Matthew Cieslak; Kurt Schilling; Alberto De Luca; Jacques-Donald Tournier; John Kruper; Francois Rheault; Stamatios N Sotiropoulos; Franco Pestilli; Jelle Veraart; Joseph Yuan-Mou Yang; Maxime Descoteaux; Sarah Heilbronner; Ariel Rokem
Affiliations1. Mass General Brigham Department of Radiology, Brigham and Women’s Hospital, , Boston, MA ,; 2. Harvard Medical School , Boston, MA ,; 3. ASG Superconductors S.p.A. , Genoa ,; 4. University of Verona Department of Computer Science, , Verona ,; 5. Indiana University Department of Psychological and Brain Sciences, , Bloomington, IN ,; 6. Baylor College of Medicine Department of Neurosurgery, , Houston, TX ,; 7. University of Pennsylvania Lifespan Informatics and Neuroimaging Center (PennLINC), Department of Psychiatry, Perelman School of Medicine, , Philadelphia, PA ,; 8. Penn/CHOP Lifespan Brain Institute, Perelman School of Medicine, Children’s Hospital of Philadelphia Research Institute , Philadelphia, PA ,; 9. University of Pennsylvania Department of Psychiatry, Perelman School of Medicine, , Philadelphia, PA ,; 10. Vanderbilt University Medical Center Department of Radiology, , Nashville, TN ,; 11. Image Sciences Institute, University Medical Center Utrecht , Utrecht ,; 12. St. Thomas’ Hospital Department of Biomedical Engineering, School of Biomedical Engineering and Imaging Sciences, King’s College London, King’s Health Partners, , London ,; 13. Centre for the Developing Brain, School of Biomedical Engineering and Imaging Sciences, King’s College London, King’s Health Partners, St. Thomas’ Hospital , London ,; 14. University of Washington Department of Psychology, , Seattle, WA ,; 15. Université de Sherbrooke Sherbrooke Connectivity Imaging Lab (SCIL), Department of Computer Science, , Sherbrooke, Québec ,; 16. Sir Peter Mansfield Imaging Centre, School of Medicine, University of Nottingham , Nottingham ,; 17. NIHR Nottingham Biomedical Research Centre, School of Medicine, Queen’s Medical Centre , Nottingham ,; 18. The University of Texas at Austin Department of Psychology, , Austin, TX ,; 19. The University of Texas at Austin Department of Neuroscience, , Austin, TX ,; 20. School of Medicine, New York University , New York, NY ,; 21. Royal Children’s Hospital Department of Neurosurgery, Neuroscience Advanced Clinical Imaging Service (NACIS), , Melbourne, Victoria ,; 22. Neuroscience Research, Murdoch Children’s Research Institute , Melbourne, Victoria ,; 23. University of Melbourne Department of Paediatrics, , Melbourne, Victoria ,; 24. The University of Washington eScience Institute, University of Washington , Seattle, WA ,
Characterizing a species-rich and understudied tropical insect fauna using DNA barcoding
AuthorsDavid R Hemprich-Bennett; Ezekiel Donkor; Bernard Adams; Naana Afua Acquaah; Eva D Ofori; Samuel Anie-Amoah; Abigail Bailey; Hugh Charles J Godfray; Owen T Lewis; Fred Aboagye-Antwi; Talya D Hackett
Affiliations1. University of Oxford Department of Biology, , Life and Mind Building, South Parks Road, Oxford,OX1 3EL ,; 2. School of Biological Science, College of Basic and Applied Sciences, University of Ghana Department of Animal Biology and Conservation Science, P.O. Box LG 25, LegonAccraGA-490-0243; 3. African Regional Postgraduate Programme in Insect Science, School of Biological Science, College of Basic and Applied Sciences, University of Ghana P.O. Box LG 25, LegonAccraGA-490-0243; 4. School of Biology, Faculty of Biological Sciences, University of Leeds , Irene Manton Building, Woodhouse Lane, LeedsLS2 9JT
Stereo-cell deciphers the spatial and functional heterogeneity of polyploid hepatocytes
AuthorsYongqing Yang; Jiahui Luo; Yier Cai; Pengcheng Guo; Qiang Guo; Hong Wu; Longqi Liu; Shijie Hao
Affiliations1. College of Life Sciences, University of Chinese Academy of Sciences , 19A Yuquan Road, Shijingshan District, Beijing 100049 ,; 2. BGI Research , 203 Zhenzhong Road, Xihu District , Hangzhou 310030 ,; 3. BGI Research, 203 Zhenzhong Road, Xihu District , Hangzhou 310030 ,; 4. School of Biology and Biological Engineering, South China University of Technology , 382 Waihuan East Road, Panyu District, Guangzhou 510006 ,; 5. Guangdong Country Garden School , 101 Country Garden Road, Shunde District, Foshan 528311 ,; 6. State Key Laboratory of Genome and Multi-omics Technologies, BGI Research , 203 Zhenzhong Road, Xihu District, Hangzhou 310030 ,
Chromosome-level genome assembly and transcriptomes of the leaf insect Cryptophyllium westwoodii provide insights into the evolution of leaf-like masquerade
AuthorsChuyang Mao; Zhiwei Dong; Zihe Li; Botong Zhou; Yi Hu; Jun Li; Guichun Liu; Zheng Zhou; Jinwu He; Yuhan Wu; Wenting Wan; Haoran Gao; Ruoping Zhao; Wenhui Nie; Wen Wang; Xueyan Li
Affiliations1. State Key Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences , Kunming 650223 ,; 2. Kunming College of Life Science, University of Chinese Academy of Sciences , Kunming 650223 ,; 3. New Cornerstone Science Laboratory, Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, Department of Ecology and Environment, School of Life Science and Technology, Northwestern Polytechnical University , Xi’an 710072 ,; 4. College of Medicine, Xi’an International University Department of Basic Medicine, , Xi’an 710077 ,; 5. College of Plant Protection, Yunnan Agricultural University Department of Entomology, , Kunming 650223 ,
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