Paper Review Records
All Paper Review Records
19 valid samples · Newest publication first
Review days = acceptance date − received date. PDF, DOI, and publisher-page sources are retained.
BONAFIDE: a Python framework for the calculation of local features for atoms and bonds in molecules
AuthorsLukas M. Sigmund; Michele Assante; Matthew Ball; Mikhail Kabeshov
Affiliations1. Molecular AI, Discovery Sciences, R&D, AstraZeneca Gothenburg, Mölndal, Sweden; 2. Innovation Centre in Digital Molecular Technologies, Department of Chemistry, University of Cambridge, Cambridge, UK; 3. Compound Synthesis and Management, The Discovery Centre, Cambridge Biomedical Campus, AstraZeneca Cambridge, Cambridge, UK; 4. Laboratory of Cheminformatics, University of Strasbourg, Strasbourg, France
Computational applications in secondary metabolite discovery (CAiSMD) 2026: focus on secondary metabolites towards drug discovery
AuthorsFidele Ntie-Kang; Jude Y. Betow; Donatus B. Eni; Jonathan A. Metuge; Albisto Adriano; Mary Anti Chama; Hans Denis Bamal; Philippe Belle Ebanda Kedi; Lívia Mendes Campos; Abubakar Sadiq Abdullahi; Gabriel Francisco Filippin Medina; Seraphin B. N. Mbeket; Yemi A. Adekunle; Alice Rhelly V. Carvalho; Bruno D. A. Akamba; Christianah Adebimpe Dare; Yoshua B. Mtulo; Edgar López-López; Yannick Djoumbou-Feunang; Clovis S. Metuge; Solange Ndamo; Daniel M. Shadrack; Bakary N’tji Diallo; Boris D. Bekono; Marilia Valli; James A. Mbah; Saheed Sabiu; Samuel A. Egieyeh; José L. Medina-Franco; Jutta Ludwig-Müller
Affiliations1. Center for Drug Discovery, Faculty of Science, University of Buea, Buea, Cameroon; 2. Department of Chemistry, Faculty of Science, University of Buea, Buea, Cameroon; 3. Department of Pharmaceutical Chemistry, Martin-Luther University of Halle-Wittenberg, Halle, Germany; 4. Department of Chemistry, Higher Teachers’ Training College, University of Buea, Buea, Cameroon; 5. Department of Natural Resources and Environmental Sciences, Alabama A&M University, Huntsville, USA; 6. Biodiversity and Medicinal Chemistry Group, School of Pharmaceutical Sciences of Ribeirão Preto (FCFRP), Department of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil; 7. Department of Chemistry, University of Ghana, Accra, Ghana; 8. Department of Pharmaceutical Sciences, University of Douala, Douala, Cameroon; 9. Faculty of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo (USP), Ribeirão Preto, Brazil; 10. Young Researchers Forum of Nigeria, Department of Pharmaceutical and Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Nigeria, Nsukka, Nigeria; 11. Department of Physics, Faculty of Science, University of Ngaoundere, Ngaoundere, Cameroon; 12. Department of Pharmaceutical and Medicinal Chemistry, College of Pharmacy, Afe Babalola University, Ado-Ekiti, Nigeria; 13. Department of Pharmaceutical and Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Ibadan, Ibadan, Nigeria; 14. Centre for Natural Product Discovery, School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Liverpool, UK; 15. Department of Biochemistry, Faculty of Science, University of Yaoundé I, Yaoundé, Cameroon; 16. Center of Nutrition and Functional Foods, Yaoundé, Cameroon; 17. The Nelson Mandela African Institute of Science and Technology, Arusha, Tanzania; 18. Department of Biochemistry, Osun State University, Osogbo, Nigeria; 19. Department of Educational Psychology and Curriculum Studies, The University of Dodoma, Dodoma, Tanzania; 20. Department of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden; 21. Corteva Agriscience, Research, 1862 White Sands Street, United States; 22. Department of Chemistry, Saint John University of Dodoma, Dodoma, Tanzania; 23. University of Science Techniques and Technologies of Bamako (USTTB), Bamako, Mali; 24. Department of Physics, Ecole Normale Supérieure, University of Yaounde 1, Yaoundé, Cameroon; 25. Computational and System Biology Research Group, Department of Biotechnology and Food Science, Durban University of Technology, Durban, South Africa; 26. School of Pharmacy, University of the Western Cape, Cape Town, South Africa; 27. DIFACQUIM Research Group, Department of Pharmacy, School of Chemistry, National Autonomous University of Mexico, Mexico City, Mexico; 28. Faculty of Biology, Technische Universität Dresden, Dresden, Germany
Using MR-chordless circuits for efficient enumeration of autocatalytic cores in large chemical reaction networks
AuthorsRichard Golnik; Nicola Vassena; Peter F. Stadler; Thomas Gatter
Affiliations1. Bioinformatics Group, Department of Computer Science, Leipzig University, Leipzig, Germany; 2. Zuse School for Embedded and Composite Artificial Intelligence (SECAI), Leipzig University, Leipzig, Germany; 3. Interdisciplinary Center for Bioinformatics, Leipzig University, Leipzig, Germany; 4. Center for Scalabale Data Analytics and Artificial Intelligence, Leipzig University, Leipzig, Germany; 5. Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany; 6. Department of Theoretical Chemistry, University of Vienna, Wien, Austria; 7. Facultad de Ciencias, Universidad National de Colombia, Bogotá, Colombia; 8. Center for non-coding RNA in Technology and Health, University of Copenhagen, Frederiksberg, Denmark; 9. Santa Fe Institute, Santa Fe, USA
The impact of reward scalarization and weight scheduling on optimization dynamics in multi-objective molecular design
AuthorsLucas Leuschner; Oscar Palomino-Hernandez
Affiliations1. Department of Chemistry, Johannes Gutenberg University Mainz, Mainz, Germany; 2. Institute for Quantitative and Computational Biosciences (IQCB), Johannes Gutenberg University Mainz, Mainz, Germany
Fast intermolecular interaction energy calculation with the OPLS-AA force field
AuthorsMirco Daniel; Hannah Kullik; Martin Urban; Christoph Steinbeck; Achim Zielesny
Affiliations1. Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, Recklinghausen, Germany; 2. Microverse Center Jena, Friedrich-Schiller University, Jena, Germany
A decoupled alignment kernel for peptide membrane permeability predictions
AuthorsAli Amirahmadi; Gökçe Geylan; Leonardo De Maria; Farzaneh Etminani; Mattias Ohlsson; Alessandro Tibo
Affiliations1. Center for Applied Intelligent Systems Research in Health, Halmstad University, Halmstad, Sweden; 2. Molecular AI, Discovery Sciences, R&D, AstraZeneca, Mölndal, Sweden; 3. Division of Systems and Synthetic Biology, Department of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden; 4. Medicinal Chemistry, Research and Early Development, Respiratory & Immunology, BioPharmaceuticals R&D, AstraZeneca, Mölndal, Sweden; 5. Department of Research and Development (FoU), Region Halland, Halmstad, Sweden; 6. Centre for Environmental and Climate Science, Computational Science for Health and Environment, Lund University, Lund, Sweden
How well can off-the-shelf LLMs elucidate molecular structures from mass spectra using chain-of-thought reasoning?
AuthorsYufeng Wang; Lu Wei; Lin Liu; Hao Xu; Haibin Ling
Affiliations1. Department of Computer Science, Stony Brook University, Stony Brook, USA; 2. Department of Chemistry, Stanford University, Stanford, USA; 3. Department of Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, USA; 4. Department of Artificial Intelligence, Westlake University, Hangzhou, China
Transformers for molecular property prediction: domain adaptation efficiently improves performance
AuthorsAfnan Sultan; Max Rausch-Dupont; Shahrukh Khan; Olga Kalinina; Dietrich Klakow; Andrea Volkamer
Affiliations1. Data Driven Drug Design, Center for Bioinformatics, PharmaScienceHub (PSH), Saarland University, Saarbrücken, Germany; 2. Spoken Language Systems, PharmaScienceHub (PSH), Saarland Informatics Campus, Saarland University, Saarbrücken, Germany; 3. Drug Bioinformatics, Center for Bioinformatics, Medical Faculty, PharmaScienceHub (PSH), Saarland University, Saarbrücken, Germany; 4. Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), PharmaScienceHub (PSH), Saarbrücken, Germany
Computational mapping of productive POI–E3 ligase conformations to guide de novo degrader design: application to WEE1 and PKMYT1 PROTACs
AuthorsHusam Nassar; Matthias Schmidt; Hany S. Ibrahim; Dina Robaa; Wolfgang Sippl
Affiliations1. Department of Medicinal Chemistry, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg, Halle (Saale), Germany
Evaluation of deep learning architectures for predicting ligand interactions with neurologically relevant GPCRs
AuthorsSouvik Dey; Pinyi Lu; Anders Wallqvist; Mohamed Diwan M. AbdulHameed
Affiliations1. Department of Defense Biotechnology High Performance Computing Software Applications Institute, Defense Health Agency Research & Development, Medical Research and Development Command, Fort Detrick, USA; 2. The Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, USA
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