Paper Review Records
All Paper Review Records
10 valid samples · Newest publication first
Review days = acceptance date − received date. PDF, DOI, and publisher-page sources are retained.
An approach based on linear programming to build experimentally driven pump-leak models
AuthorsLuigi Catacuzzeno; Maurizio G. Cavaliere; Antonio Michelucci
AffiliationsDepartment of Chemistry, Biology, and Biotechnology, University of Perugia, Perugia, Italy
Predicting side chain conformations in folded proteins by AlphaFold: Perspective and challenges
AuthorsGia G. Maisuradze; Abhishek Thakur; Kisan Khatri; Allan Haldane; Ronald M. Levy
AffiliationsCenter for Biophysics and Computational Biology, Temple University, Philadelphia, Pennsylvania; Department of Chemistry, Temple University, Philadelphia, Pennsylvania; Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, New York; Department of Physics, Temple University, Philadelphia, Pennsylvania
Markovian state models uncover casein kinase 1 dynamics that govern circadian period
AuthorsClarisse Gravina Ricci; Jonathan M. Philpott; Megan R. Torgrimson; Alfred M. Freeberg; Rajesh Narasimamurthy; Emilia Pécora de Barros; Rommie Amaro; David M. Virshup; J. Andrew McCammon; Carrie L. Partch
AffiliationsDepartment of Chemistry and Biochemistry, University of California, San Diego, San Diego, California; Department of Chemistry and Biochemistry, University of California, Santa Cruz, Santa Cruz, California; Program in Cancer and Stem Cell Biology, Duke-NUS Medical School, Singapore, Singapore; Department of Pediatrics, Duke University Medical Center, Durham, North Carolina; Center for Circadian Biology, University of California, San Diego, San Diego, California; Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, California
Structural and functional characterization of the Pro64Ser leptin mutant: Implications for congenital leptin deficiency
AuthorsBao Quoc Ngo; Outi Lampela; André H. Juffer
AffiliationsFaculty of Biochemistry and Molecular Medicine, University of Oulu, PO Box 5400, 90014 Oulu, Finland; Biocenter Oulu and Faculty of Biochemistry and Molecular Medicine, University of Oulu, PO Box 5400, 90014 Oulu, Finland
Multi-scale simulations of MUT-16 scaffold protein phase separation and client recognition
AuthorsKumar Gaurav; Virginia Busetto; Diego Javier Páez-Moscoso; Arya Changiarath; Sonya M. Hanson; Sebastian Falk; René F. Ketting; Lukas S. Stelzl
AffiliationsInstitute of Molecular Physiology, Johannes Gutenberg University Mainz, Mainz, Germany; Institute of Molecular Biology (IMB), Mainz, Germany; KOMET1, Institute of Physics, Johannes Gutenberg University Mainz, Mainz, Germany; Max Perutz Lab, Vienna Biocenter Campus (VBC), Vienna, Austria; University of Vienna, Center for Molecular Biology, Department of Structural and Computational Biology, Vienna, Austria; Flatiron Institute, Center for Computational Biology & Center for Computational Mathematics, New York City, USA
Molecular dynamics simulations reveal subtle consequences of H3K9 and H3K27 tri-methylation on chromatin constituents
AuthorsStephanie Portillo-Ledesma; Zilong Li; Tamar Schlick
AffiliationsDepartment of Chemistry, New York University, New York, New York; Courant Institute of Mathematical Sciences, New York University, New York, New York; New York University-East China Normal University Center for Computational Chemistry, New York University Shanghai, Shanghai, China; Simons Center for Computational Physical Chemistry, New York University, New York, New York
Molecular origins of high viscosity in concentrated solutions of monoclonal antibodies
AuthorsArjun Valiya Parambathu; David J. Rosenman; Sandeep Yadav; Abraham M. Lenhoff
AffiliationsDepartment of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware; Genentech, South San Francisco, California
2Danalysis: A toolbox for analysis of lipid membranes and biopolymers in two-dimensional space
AuthorsRicardo X. Ramirez; Antonio M. Bosch; Rubén Pérez; Horacio V. Guzman; Viviana Monje
AffiliationsDepartment of Chemical and Biological Engineering, State University of New York at Buffalo, Buffalo, New York; Departamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, Madrid, Spain; Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, Madrid, Spain; Institut de Ciència de Materials de Barcelona ICMAB-CSIC, Barcelona, Spain; Biophysics and Intelligent Matter Lab, Barcelona, Spain
Syntaxin 1A transmembrane domain palmitoylation induces a fusogenic conformation
AuthorsDong An; Satyan Sharma; Manfred Lindau
AffiliationsDepartment of Physiology and Biophysics, University of Miami Miller School, Miami, Florida; Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden
Path sampling challenges in large biomolecular systems: RETIS and REPPTIS for ABL-imatinib kinetics
AuthorsWouter Vervust; Daniel T. Zhang; Enrico Riccardi; Titus S. van Erp; An Ghysels
AffiliationsIBiTech - BioMMedA Research Group, Ghent University, Gent, Belgium; Research Institute for Interdisciplinary Science, Okayama University, Okayama, Japan; Department of Energy Resources, University of Stavanger, Stavanger, Norway; Department of Chemistry, Norwegian University of Science and Technology, Trondheim, Norway
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