Paper Review Records
All Paper Review Records
10 valid samples · Newest publication first
Review days = acceptance date − received date. PDF, DOI, and publisher-page sources are retained.
AssayBLAST v2: major update improving reliability and reporting of the in silico analysis of molecular multi-parameter assays
AuthorsTom Eulenfeld; Maximillian Collatz; Sascha D. Braun; Ralf Ehricht
Affiliations1. RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, Jena, Germany; 2. Bioinformatics Core Facility Jena, Friedrich Schiller University Jena, Jena, Germany; 3. Leibniz Institute of Photonic Technology, Member of the Research Alliance ”Leibniz Health Technologies” and the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany; 4. InfectoGnostics Research Campus Jena, Center for Applied Research, Jena, Germany; 5. Center for Translational Medicine (CETRAMED), Jena University Hospital, Friedrich Schiller University Jena, Jena, Germany; 6. Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena, Germany
TOMOC: a topology-driven multi-objective evolutionary framework for robust overlapping protein complex detection in noisy PPI networks
AuthorsMustafa Abbas; David Broneske; Gunter Saake
Affiliations1. Databases and Software Engineering, Otto-von-Guericke-University, Magdeburg, Germany; 2. German Centre for Higher Education Research and Science Studies, Hanover, Germany
MiRQuery: a user-friendly web app for the interactive analysis and visualization of microRNA sequencing data
AuthorsJulianne C. Yang; Jake Sauter; Gregory C. Adam; Richard Carr
Affiliations1. Quantitative Biosciences, Merck & Co., Inc., West Point, USA; 2. Quantitative Biosciences, Merck & Co., Inc., Cambridge, USA
plsMD: a plasmid reconstruction tool from short-read assemblies
AuthorsMaryam Lotfi; Deena Jalal; Ahmed A. Sayed
Affiliations1. Department of Basic Research, Genomics and Metagenomics Program, Children’s Cancer Hospital Egypt 57357, Cairo, Egypt; 2. Faculty of Science, Department of Biochemistry, Ain Shams University, Cairo, Egypt
Introducing GalaxyR: an easy-to-use R implementation of the Galaxy API
AuthorsJulian Frey; Zoe Schindler; Muhammad Ali; Joshua Braun-Wimmer; Kilian Gerberding; Katja Kröner; Elena Larysch; Daniel Lusk; Janusch Vanja-Jehle; Yannik Wardius; Maximilian Weidenfeller; Teja Kattenborn; Thomas Seifert
Affiliations1. Chair of Forest Growth and Dendroecology, Freiburg University, Freiburg, Germany; 2. Chair of Sensor-based Geoinformatics, Freiburg University, Freiburg, Germany
Machine learning-based prediction of SARS-CoV-2 bioactivity: integrating IC 50 regression and activity classification using multi-task neural networks
AuthorsAya I. Maiyza; Sohila Osama; Hanan A. Hassan
Affiliations1. Informatics Research Institute (IRI), City of Scientific Research and Technological Applications (SRTA-City), Alexandria, Egypt; 2. Institute of Graduate Studies and Research, Alexandria University, Alexandria, Egypt
Residual-stream geometry of single-cell foundation models carries incremental gene-regulatory signal across tissues
AuthorsIhor Kendiukhov
Affiliations1. Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany
Mol2Image: an enhanced DDI prediction framework leveraging drug molecular descriptors
AuthorsNourhan Helmy; Huda Amin Maghawry; Nagwa Badr
Affiliations1. Information Systems Department, Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt
Interpretable prediction of DNA replication origins in S. cerevisiae using DNABERT and DNABERT-2
AuthorsZohreh Piroozeh; Ildem Akerman; Olga V. Kalinina; Stefan Kesselheim; Alina Bazarova
Affiliations1. Jülich Supercomputing Centre, Forschungszentrum Jülich, Jülich, Germany; 2. Centre for Bioinformatics, Saarland University, Saarbrücken, Germany; 3. Institute of Biomedical Research, University of Birmingham, Birmingham, UK; 4. Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Saarbrücken, Germany; 5. Medical Faculty, Saarland University, Homburg, Germany; 6. Helmholtz AI, Munich, Germany; 7. Faculty of Mathetmatics and Natural Sciences, University of Cologne, Cologne, Germany
A novel attention mechanism for noise-adaptive and robust segmentation of microtubules in microscopy images
AuthorsAchraf Ait Laydi; Louis Cueff; Mewen Crespo; Yousef El Mourabit; Hélène Bouvrais
Affiliations1. CNRS, Univ. Rennes, IGDR (Institut de Génétique Et Développement de Rennes), UMR6290, Rennes, France; 2. TIAD Laboratory, Sciences and Technology Faculty, Sultan Moulay Slimane Univ, Beni-Mellal, Morocco; 3. IRMAR – UMR 6625, Rennes, France
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