Paper Review Records
All Paper Review Records
10 valid samples · Newest publication first
Review days = acceptance date − received date. PDF, DOI, and publisher-page sources are retained.
ParTIpy: a scalable framework for archetypal analysis and Pareto task inference
AuthorsPhilipp Sven Lars Schäfer; Leoni Zimmermann; Paul L Burmedi; Avia Walfisch; Noa Goldenberg; Shira Yonassi; Einat Shaer Tamar; Miri Adler; Jovan Tanevski; Ricardo O Ramirez Flores; Julio Saez-Rodriguez
Affiliations1. Institute for Computational Biomedicine, Heidelberg University and Heidelberg University Hospital, Heidelberg, Germany; 2. Department of Genetics, Silberman Institute of Life Sciences; and Department of Immunology and Cancer Research, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel; 3. Department of Biological Chemistry, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel; 4. Center for Computational Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel; 5. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
Multiscale learning of gene network-driven phenotypic dynamics of single cells
AuthorsDongyan Zhang; Jinan Li; Qing Nie; Xiaoqiang Sun
Affiliations1. School of Mathematics, Sun Yat-sen University, Guangzhou, China; 2. Department of Mathematics and Department of Developmental & Cell Biology, University of California Irvine, Irvine, USA; 3. Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, China
Active learning-guided mechanistic modeling reveals context-specific regulators of CXCL9 expression in pancreatic cancer cells
AuthorsBi-rong Wang; Maaruthy Yelleswarapu; Lucie Descamps; Federica Eduati
Affiliations1. Department of Biomedical Engineering, Eindhoven University of Technology, Eindhoven, the Netherlands; 2. Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven, The Netherlands; 3. Eindhoven Artificial Intelligence Systems Institute, Eindhoven University of Technology, Eindhoven, Netherlands
Toward trustworthy healthcare AI: designing academic research for translation readiness
AuthorsAchim Hekler; Florian Buettner
Affiliations1. Institute of Informatics, Goethe University Frankfurt, Frankfurt am Main, Germany; 2. German Cancer Consortium (DKTK), partner site Frankfurt/Mainz, a partnership between DKFZ and UCT Frankfurt-Marburg, Frankfurt am Main, Germany; 3. German Cancer Research Center (DKFZ), Heidelberg, Germany; 4. Frankfurt Cancer Institute (FCI), Frankfurt am Main, Germany; 5. Department of Medicine, Goethe University Frankfurt, Frankfurt am Main, Germany; 6. Department of Medicine II, Hematology and Oncology, Goethe University Frankfurt, University Hospital Frankfurt, Frankfurt am Main, Germany
Immunoglobulin sub-class levels define inter-donor plasma variability: a longitudinal dual-lab study
AuthorsStephan Michalik; Sofia Kalaidopoulou Nteak; Nicolas Drouin; Manuela Gesell Salazar; Elke Hammer; Vishnu Mukund Dhople; Silva Holtfreter; Stefan Weiss; Henk W P van den Toorn; Barbara M Bröker; Grażyna Domańska; Uwe Völker; Albert J R Heck
Affiliations1. Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany; 2. German Center for Cardiovascular Research (DZHK), partner site North (Greifswald), Greifswald, Germany; 3. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, the Netherlands; 4. Netherlands Proteomics Center, Utrecht, the Netherlands; 5. Institute of Immunology, University Medicine Greifswald, Greifswald, Germany
Burst of aneuploidy: a cost of adaptation driven by breakdown of cell cycle control
AuthorsAdrian Pirog; Hanna Tutaj; Katarzyna Tomala; Ryszard Korona
Affiliations1. Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Krakow, Poland
Decoding and steering spatially resolved cellular dynamics
AuthorsJiahao Wu; Suoqin Jin
Affiliations1. School of Mathematics and Statistics, Wuhan University, Wuhan, China
Cell painting and thermal proteome profiling for inference of drug targets and mechanism of action
AuthorsCamilla Johansson; Martin Johansson; Phanindra Babu Kasi; Mårten Larsson; Per-Johan Jakobsson; Ulf Göransson; Jordi Carreras Puigvert; Ola Spjuth; Erik T Jansson
Affiliations1. Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden; 2. Chemical Biology Consortium Sweden, Science for Life Laboratory, Uppsala, Sweden; 3. Division of Rheumatology, Department of Medicine, Karolinska Institutet and Karolinska University Hospital, Solna, Sweden
Cross-species insights from ART-D to uncover evolutionarily conserved oncogenic mechanisms
AuthorsYifan Guo; Jiadong Zheng; Yixin Wu; Kun Zhao; Dian Lv; Wenhan Liu; Mengling Wang; Jin-Yu Lu; Wenyan Xu; Xianping Wang; Xianjue Ma
Affiliations1. Fudan University, Shanghai, China; 2. State Key Laboratory of Gene Expression, School of Life Sciences, Westlake University, Hangzhou, China; 3. Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, China; 4. Department of Oncology, Montefiore Einstein Comprehensive Cancer Center, Albert Einstein College of Medicine, Bronx, USA
Single-cell morphodynamics predict cell fate decisions during mucociliary epithelial differentiation
AuthorsMari Tolonen; Ziwei Xu; Ozgur Beker; Varun Kapoor; Bianca Dumitrascu; Jakub Sedzinski
Affiliations1. The Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW), University of Copenhagen, Copenhagen, Denmark; 2. Department of Biomedical Sciences, University of Copenhagen, Copenhagen, Denmark; 3. Department of Statistics, Columbia University, New York, USA; 4. Irving Institute for Cancer Dynamics, Columbia University, New York, USA; 5. Kapoorlabs, Paris, France; 6. Universität Osnabrück, Osnabrück, Germany; 7. Department of Computer Science, Columbia University, New York, USA; 8. Columbia Stem Cell Institute, Columbia University, New York, USA
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