Microbiome

AuthorsHirokuni Miyamoto; Hideyuki Takahashi; Wataru Suda; Haruki Yamano; Yudai Inabu; Hiroaki Kodama; Yumiko Nakanishi; Shigeharu Moriya; Takashi Satoh; Tamotsu Kato; Chie Shindo; Naoko Tsuji; Makiko Matsuura; Chitose Ishii; Teruno Nakaguma; Tetsuji Etoh; Yuji Shiotsuka; Motoaki Udagawa; Atsushi Kurotani; Kenta Suzuki; Hiroshi Masuya; Satoshi Wada; Shinji Fukuda; Yukihiro Tashiro; Hisashi Miyamoto; Jun Kikuchi; Masahira Hattori; Takumi Nishiuchi; Naoki Yamamoto; Hiroshi Ohno

Affiliations1. RIKEN Center for Integrative Medical Sciences, Yokohama, Japan; 2. Graduate School of Horticulture, Chiba University, Matsudo, Japan; 3. Japan Eco-Science (Nikkan Kagaku) Co., Ltd., Chiba, Japan; 4. Sermas Co., Ltd, Ichikawa, Japan; 5. Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan; 6. Kuju Agricultural Research Center, Kyushu University, Takeda, Japan; 7. Graduate School of Integrated Sciences for Life, Hiroshima University, Higashihiroshima, Japan; 8. RIKEN Center for Advanced Photonics, Wako, Japan; 9. Division of Hematology, Kitasato University School of Allied Health Sciences, Sagamihara, Japan; 10. Keiyo Gas Energy Solution Co. Ltd, Ichikawa, Japan; 11. Research Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Japan; 12. RIKEN, BioResource Research Center, Tsukuba, Japan; 13. Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan; 14. Gut Environmental Design Group, Kanagawa Institute of Industrial Science and Technology, Kawasaki, Japan; 15. Transborder Medical Research Center, Institute of Medicine, University of Tsukuba, Tsukuba, Japan; 16. Innovative Microbiome Therapy Research Center, Juntendo University Graduate School of Medicine, Tokyo, Japan; 17. Laboratory of Soil and Environmental Microbiology, Division of Systems Bioengineering, Department of Bioscience and Biotechnology, Faculty of Agriculture, Graduate School of Bioresources and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan; 18. Laboratory of Microbial Environmental Protection, Tropical Microbiology Unit, Center for International Education and Research of Agriculture, Faculty of Agriculture, Kyushu University, Fukuoka, Japan; 19. Miroku Co. Ltd, Kitsuki, Japan; 20. RIKEN Center for Sustainable Resource Science, Yokohama, Japan; 21. School of Advanced Science and Engineering, Waseda University, Shinju-ku, Japan; 22. Division of Integrated Omics Research, Research Center for Experimental Modeling of Human Disease, Bioscience Core Facility, Kanazawa University, Kanazawa, Japan; 23. Japan Institute for Health Security, Shinjuku-ku, Japan

AuthorsTanner G. Richie; Hallie Wiechman; Brooke Vogt; Carson Ingold; Leah Heeren; Abigail Kamke; Sophia Pogranichniy; Kourtney Monk; Trey Summers; Qinghong Ran; Soumyadev Sarkar; Brandon L. Plattner; Ashley M. Sidebottom; Eugene B. Chang; Sonny T. M. Lee

Affiliations1. Department of Pediatrics, Division of Pediatric Gastroenterology & Hepatology, University of Virginia School of Medicine, Charlottesville, USA; 2. Division of Biology, Kansas State University, Manhattan, USA; 3. Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, USA; 4. Department of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, USA; 5. Duchossois Family Institute, University of Chicago, Chicago, USA; 6. Department of Medicine, University of Chicago, Chicago, USA

AuthorsTim Van Den Bossche; Lucia Grenga; Gelio Alves; Magnus Ø. Arntzen; Dirk Benndorf; Madita Brauer; Daniel Figeys; Celine Henry; Robert L. Hettich; Robert Heyer; Pratik D. Jagtap; Nico Jehmlich; Manuel Kleiner; Leyuan Li; Bart Mesuere; Martin Pabst; Jagroop Pandhal; Phillip B. Pope; Jana Seifert; Anke Trautwein-Schult; Pieter Verschaffelt; Paul Wilmes; Jean Armengaud; Benoit J. Kunath

Affiliations1. Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium; 2. VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; 3. Département Médicaments et Technologies pour la Santé (DMTS), Université Paris-Saclay, CEA, INRAE, SPI, Bagnols-sur-Cèze, France; 4. Division of Intramural Research, National Library of Medicine, National Institutes of Health, Bethesda, USA; 5. Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway; 6. Anhalt University of Applied Sciences, Applied Biosciences and Process Engineering, Köthen, Germany; 7. Department of Life Sciences and Medicine, Faculty of Science, Technology and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg; 8. School of Pharmaceutical Sciences, Faculty of Medicine, University of Ottawa, Ottawa, Canada; 9. Quadram Institute Bioscience, Norwich, UK; 10. University of East Anglia, Norwich, UK; 11. Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France; 12. Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA; 13. Multidimensional Omics Data Analyses group, Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., Dortmund, Germany; 14. Multidimensional Omics Data Analyses group, Faculty of Technology, Bielefeld University, Bielefeld, Germany; 15. Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, USA; 16. Department of Molecular Toxicology, Helmholtz-Centre for Environmental Research - UFZ GmbH, Leipzig, Germany; 17. Department of Plant and Microbial Biology, North Carolina State University, Raleigh, USA; 18. State Key Laboratory of Medical Proteomics, National Center for Protein Sciences, Beijing, China; 19. Department of Mathematics, Computer Science, and Statistics, Ghent University, Ghent, Belgium; 20. Department of Biotechnology, Delft University of Technology, Delft, The Netherlands; 21. School of Chemical, Materials and Biological Engineering, Faculty of Engineering, University of Sheffield, Sheffield, UK; 22. Centre for Microbiome Research, Faculty of Health, School of Biomedical Sciences, Queensland University of Technology, Translational Research Institute, Woolloongabba, Australia; 23. Institute of Animal Science, University of Hohenheim, Stuttgart, Germany; 24. HoLMiR - Hohenheim Center for Livestock Microbiome Research, University of Hohenheim, Stuttgart, Germany; 25. Department of Microbial Proteomics, University of Greifswald, Institute of Microbiology, Greifswald, Germany; 26. Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg; 27. Bioinformatics and Artificial Intelligence, Department of Medical Informatics, Luxembourg Institute of Health (LIH), Strassen, Luxembourg

AuthorsTim Van Den Bossche; Maximilian Wolf; Jean Armengaud; Magnus Ø. Arntzen; Dirk Benndorf; Daniel Figeys; Lucia Grenga; Robert L. Hettich; Nithu Sara John; Pratik Jagtap; Nico Jehmlich; Manuel Kleiner; Benoit J. Kunath; Leyuan Li; Mary Lipton; Bart Mesuere; Benjamin A. Neely; Zhibin Ning; Ane Laura Pedersen; Yasset Perez-Riverol; Jeena Rajan; Kay Schallert; Jana Seifert; Sergio Uzzau; Pieter Verschaffelt; Paul Wilmes; Juan Antonio Vizcaíno; Lennart Martens; Robert Heyer

Affiliations1. CompOmics, VIB-UGent Center for Medical Biotechnology, Ghent, Belgium; 2. Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium; 3. Multidimensional Omics Analyses Group, Faculty of Technology, Bielefeld University, Bielefeld, Germany; 4. Graduate School DILS, Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld University, Bielefeld, Germany; 5. Département Médicaments Et Technologies Pour La Santé (DMTS), SPI, Université Paris-Saclay, CEA, INRAE, Bagnols-Sur-Cèze, France; 6. Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway; 7. Applied Biosciences and Process Engineering, Anhalt University of Applied Science, Köthen, Germany; 8. Faculty of Medicine, University of Ottawa, Ottawa, Canada; 9. Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, USA; 10. Wellcome Trust Genome Campus, European Bioinformatics Institute, Cambridge, UK; 11. Department of Biochemistry, Molecular Biology, and Biophysics, Minneapolis, USA; 12. Department of Molecular Toxicology, Helmholtz Centre for Environmental Research GmbH - UFZ, Leipzig, Germany; 13. Department of Plant and Microbial Biology, North Carolina State University, Raleigh, USA; 14. Department of Cancer Research, Multiomics Data Science Research Group, Luxembourg Institute of Health, Strassen, Luxembourg; 15. State Key Laboratory of Medical Proteomics, Beijing Proteome Research Center, Beijing, China; 16. Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, USA; 17. Department of Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium; 18. National Institute of Standards and Technology, Charleston, USA; 19. Nestlé Institute of Food Safety & Analytical Sciences, Nestlé Research, Lausanne, Switzerland; 20. Leibniz-Institut für Analytische Wissenschaften–ISAS–e.V., Dortmund, Germany; 21. HoLMiR—Hohenheim Center for Livestock Microbiome Research, University of Hohenheim, Stuttgart, Germany; 22. Department of Biomedical Sciences, University of Sassari, Sassari, Italy; 23. Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg, Luxembourg

AuthorsHidehiro Ishizawa; Miku Kito; Sunao Noguchi; Kodai Kimura; Masahiro Takeo

Affiliations1. Department of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, Japan; 2. Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, The University of Osaka, Suita, Japan; 3. Department of Applied Chemistry and Chemical Engineering, School of Engineering, University of Hyogo, Himeji, Japan

AuthorsLukas Fürnwein; Johannes Tichy; Monika Waldherr; Elias Lehner; Martin Ortbauer; Ylenia Vassallo; Beate Sipek; Katja Sterflinger; Guadalupe Piñar; Alexandra B. Graf

Affiliations1. Department of Applied Life Sciences/Bioengineering/Bioinformatics, Vienna, Austria; 2. Institute for Natural Sciences and Technology in the Art, Academy of Fine Arts Vienna, Vienna, Austria; 3. Institute for Conservation - Restoration, Academy of Fine Arts Vienna, Vienna, Austria; 4. Department of Medical Biotechnology, University of Siena, Siena, Italy

AuthorsDafne Porcel Sanchis; Marta Pola; J. Pamela Engelberts; Oleanna Guerra-Font; Lauren Messer; Inés Alberola-Mora; Lucía Escobar Sáez; Néstor Pérez Gómez; Álvaro Portolés Campo; Juan Valero-Tebar; Luis María Naya Garmendia; Jesús Carlos Preciado Barahona; Rosario Gil García; Vicente Arnau; Simon J. McIlroy; Mária Džunková

Affiliations1. Institute for Integrative Systems Biology (I2SysBio), University of Valencia and Spanish National Research Council (CSIC), Valencia, Spain; 2. Department of Biology Faculty of Science, Autonomous University of Madrid / CSIC, Madrid, Spain; 3. Centro de Investigación en Biodiversidad y Cambio Global (CIBC), Autonomous University of Madrid / CSIC, Madrid, Spain; 4. Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology, Translational Research Institute, Woolloongabba, Australia; 5. Earlham Institute, Norwich, UK; 6. Faculty of Education, Philosophy and Anthropology, University of the Basque Country, Bilbao, Spain; 7. Real Club Náutico de San Sebastián, San Sebastián, Spain

AuthorsShailesh K. Shahi; Sudeep Ghimire; Samantha N. Jensen; Peter C. Lehman; Allison G. Rux; Souradip Sinha; Nicholas Borcherding; Munir R. Tanas; Katherine N. Gibson-Corley; Sukirth M. Ganesan; Nitin J. Karandikar; Ashutosh K. Mangalam

Affiliations1. Department of Pathology, Carver College of Medicine, University of Iowa, Iowa City, USA; 2. Graduate Program in Immunology, University of Iowa, Iowa City, USA; 3. Iowa City VA Health Care System, Iowa City, USA; 4. Present address- Department of Microbiology and Immunology, Weill Cornell Medicine, Cornell University, New York, USA; 5. Molecular Medicine Graduate Program, University of Iowa, Iowa City, USA; 6. Center for Biocatalysis and Bioprocessing, University of Iowa, Iowa City, USA; 7. Department of Pathology and Immunology, Washington University School of Medicine, Saint Louis, USA; 8. Department of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, USA; 9. Department of Periodontics, College of Dentistry, University of Iowa, Iowa City, USA

AuthorsChunlong Wang; Shitong Li; Yiwo Liu; Xinyue Zhao; Fusen Wang; Yimin You; Xiyang Zhao

Affiliations1. Jilin Provincial Key Laboratory of Tree and Grass Genetics and Breeding, College of Forestry and Grassland Science, Jilin Agricultural University, Changchun, China; 2. Qiqihar Branch, Heilongjiang Academy of Forestry Sciences, Qiqihar City, China; 3. Jilin Changbaishan Forest Industry Group Co., Ltd., Yanji City, China

AuthorsKatie Lawther; Nicholas J. Dimonaco; Paul Donnelly; Abdulai Guinguina; Sophie J. Krizsan; Sharon A. Huws

Affiliations1. Institute for Global Food Security, School of Biological Sciences, Queen’s University Belfast, Belfast, UK; 2. Laboratory of Microbiology, Wageningen University, Wageningen, The Netherlands; 3. Production Systems, Natural Resources Institute Finland (LUKE), Jokioinen, Finland; 4. Department of Agricultural Sciences, Faculty of Applied Ecology, Agricultural Sciences and Biotechnology, Inland Norway University of Applied Sciences, Blæstad, Norway; 5. Department of Applied Animal Science and Welfare, Swedish University of Agricultural Sciences, Umeå, Sweden